BIOCODE
FDP-1 · combined map
Three views, one lattice cascade · function · macros
BIOCODE
FDP-1 · v3
System Time
22:19:19 UTC
Nodes
32
in this model
Step
26 / 30
of the cascade
Active
30
cells firing
Unevaluable
0
none open
State
FED
v3 · resistant
Cascade Graph
Library · 8 compartments
GUT· Assimilation–PANCREAS· Communication–COLON· Microbiome–LIVER· Energy–MUSCLE· Energy–MITOCHONDRIA· Oxidation–LUNGS· Exhaust–KIDNEYS· Excretion–Carb mealdietAMOUTH1 in · 1 rxnASTOMACH1 in · 1 rxnAGlucoselumenBSGLT1[0,6]BGLP-1L-cellAFibernon-dig.AGlucoseportalAInsulinβ-cellBGlucagonα-cellBFermentationASCFAliver fuelAFeceswaste sinkAGlucosehepaticBGlucokinase[8,3]AG6PBATPmodifierBPFK-1[0,4]AF1,6BPBGlycogenhepaticAPyruvateHyperglycemiadisease poleBGLUT4[0,2]BGlycolysisATPAGlycogenstoreAAcetyl-CoAAKrebs / ETCACO₂AH₂OkidneysAATPenergyACO₂ exhaledbreathAKIDNEYS0 rxn

Key

Mass / reaction flux
Signal / regulation
Disease path
Species   Reaction   Pole
ABC Evidence grade
step 26 / 30
pop CO₂ → propagate to CO₂ exhaled
“Carbs fuel your cells (→ ATP)”
PlausibleEXPANDS_BOUNDgrade B
food
Carbohydrate meal
driver
glucose
verb → class
“fuel” → bound_increase
on the map
mechanism runs — 15 nodes lit
typed as glucose → glycolysis → Krebs/ETC → ATP. Every hop is a LAW-backed reaction that exists on this map, so the mechanism walks end-to-end to the ATP node.
endpoint = ATP (cellular energy) — the real referent of “gives energy”. The one claim the map walks mouth-to-fuel.
LIVGLYSPECIES
Node {
id: "met.glycogenhepatic"
kind: species
label: "Glycogen · hepatic"
part_of: "liver" // containment
grade: B
// — identity (digestive · taxonomy · status)
map_status: mapped
digestive: null
iri: "CHEBI:28087"
taxonomy: ["Glycogen", "Glycogenesis"]
}
What's happening
Liver glycogen — glucose put into storage.
System
Energy
Role
species
Packet
Glycogen · hepatic · grade B
Compartment Activity
fired / total
IngestionAssimilation
3/3
GutAssimilation
5/5
PancreasCommunication
2/2
ColonMicrobiome
3/3
LiverEnergy
7/9
MuscleEnergy
3/3
MitochondriaOxidation
3/5
LungsExhaust
0/1
KidneysExcretion
0/1
Cascade Log
worklist trace
[26]pop CO₂ → CO₂ exhaled
[25]pop Krebs / ETC → ATP
[24]pop Acetyl-CoA → Krebs / ETC
[23]pop Pyruvate → Acetyl-CoA
[22]pop F1,6BP → Pyruvate
[21]pop PFK-1 → F1,6BP
[20]pop Glycogen · leaf
Propagation Queue
4 in flight
A
CO₂
MITOCHONDRIA · Oxidation
Firing
A
H₂O · kidneys
MITOCHONDRIA · Oxidation
Queued
A
CO₂ exhaled · breath
LUNGS · Exhaust
Queued
A
ATP · energy
MITOCHONDRIA · Oxidation
Queued
System Health
functional systems
Assimilation8/8mapped
Communication2/2mapped
Microbiome3/3mapped
Energy10/12mapped
Oxidation3/5mapped
Exhaust0/1idle
Excretion0/1idle
Absorption Bounds · Assimilation
gate: mechanism · 19 gate · 2 rejected · 0 bound
AnalyteFractionCertSupportConfProvenance
Zinc
70%/3 mg not in abstract — may be synthesis
0.70 @3mggateCANNOT VERIFYMEDLönnerdal 2000 · 10.1093/jn/130.5.1378S
Copper
MISMATCH — Wapnir headline 30–40%, needs dose qualifier
>0.50 lowgatePARTIALHIGHWapnir 1998 · 10.1093/ajcn/67.5.1054S
Copper
threshold value not in parent abstract
<0.15 >6–7mggateCANNOT VERIFYMEDWapnir 1998 · 10.1093/ajcn/67.5.1054S
Magnesium
SCOPE — mineral water, n=10 women, not food matrix
0.30–0.60gatePARTIALHIGHSabatier 2002 · 10.1093/ajcn/75.1.65
Selenium
SPECIES — rat ligated-loop, not a human figure
>0.90gatePARTIALHIGHVendeland 1992 · 10.1016/0955-2863(92)90028-H
Manganese
unsourced textbook assertion
<0.02gateCANNOT VERIFYLOWno named parent
Chromium
unsourced; picolinate-specific
0.005–0.02gateCANNOT VERIFYLOWno named parent
Fluoride0.50gateCANNOT VERIFYLOWno named parent
Nickel0.01gateCANNOT VERIFYLOWno named parent
Vanadium0.01–0.05gateCANNOT VERIFYLOWno named parent
Iodine>0.90gateCANNOT VERIFYLOWno named parent
Molybdenum
sulfate inhibits — see transporter edges
>0.90gateCANNOT VERIFYLOWno named parent
Calcium
REJECTED — high for adults; re-anchor IOM 2011
>0.40 youngrejectedCANNOT VERIFYNONEno named parent
Calcium
value unsourced; age-direction uncontroversial
0.20 oldergateCANNOT VERIFYLOWno named parent
Ascorbate (C)
SATURABLE — monotonic scoring wrong above elbow
0.75gateCANNOT VERIFYLOWno named parent
Folate (synth)
food folate ≈ half — distinct analyte
0.85gateCANNOT VERIFYLOWno named parent
Retinol0.70–0.90gateCANNOT VERIFYLOWno named parent
Provit-A carotenoids
fat-dependent — requires mixed micelles
<0.03gateCANNOT VERIFYLOWno named parent
β-carotene cleavage
REJECTED — superseded by IOM 2001 RAE 12:1/24:1
0.15rejectedCANNOT VERIFYNONEno named parent
Vitamin K (greens)
matrix-dependent — needs form + matrix scoping
<0.20gateCANNOT VERIFYLOWno named parent
Dietary fat
lipolysis-stage share; not in abstract — read full text
0.10–0.20gateCANNOT VERIFYMEDCarrière 1993 · 10.1016/0016-5085(93)90908-U
A governance-diagram read of the nutrient model — one governed gut, routing each nutrient to the jobs it does. A nutrient in several panels (Fe, Zn, Cu, Mg…) is the multi-membership; the Governed by FDP-1 strip is the same law-lattice that grades every value.